Fig. 5

Differences in species abundance, returned by LEfSe, most likely explaining the differences among dietary treatments. (A) Species associated with each dietary treatment in the analysis of global species data. (B) Taxa associated with each dietary treatment in the analysis of global species data. Significant species are coloured according to the treatment to which they are associated with, and are annotated in the cladogram as letters, which can be identified below. (C) Species associated with each treatment at day 7 post weaning (7dpw). (D) Species associated with each treatment at day 14 post weaning (14dpw). (E) Species associated with each treatment, in diarrhoea samples of day 7 post weaning (7dpw). LEfSe: Linear discriminant analysis Effect Size