Fig. 6

Differences in Super-focus (SF) functional levels 1 (A-C) and 2 (D-F), returned by LEfSe. (A) Functional SF1 categories associated with each dietary treatment in the analysis of Faecal_7dpw. (B) Functional SF1 categories associated with each dietary treatment in the analysis of Diarrhoea_7dpw. (C) Functional SF1 categories associated with each dietary treatment in the analysis of Faecal_14dpw. (D) Functional SF2 categories associated with each dietary treatment in the analysis of Faecal_7dpw. (E) Functional SF2 categories associated with each dietary treatment in the analysis of Diarrhoea_7dpw. (F) Functional SF2 categories associated with each dietary treatment in the analysis of Faecal_14dpw. Significant functional categories given by LEfSe (Linear discriminant analysis Effect Size) are coloured according to the treatment to which they are associated to