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Table 1 Alpha diversity metrics for hatchery microbiota separated by sample type category and hatchery area

From: 16S amplicon-based microbiome biomapping of a commercial broiler hatchery

 

Richness (Observed OTUs)

Diversity (Shannon)

Evenness (Equitability)

Sample Type Category1

Air (N = 40)

357.82B

3.45B

0.5906BC

Egg (N = 40)

421.75B

3.53B

0.5808C

Water (N = 32)

534.81A

4.19A

0.6700A

FAC (N = 72)

396.31B

3.77AB

0.6344AB

Hatchery Area1,2

EI (N = 32)

564.25A

4.26A

0.6741A

PrI (N = 32)

497.03AB

4.15A

0.6707AB

PoI (N = 24)

312.04DE

3.35B

0.5848C

PR (N = 32)

305.09E

3.44B

0.604AC

T (N = 24)

412.16BC

3.23B

0.5295C

FAC (N = 40)

388.44CD

3.54B

0.6028BC

  1. 1 Superscript letters indicate significantly different prevalence values based on Kruskal–Wallis analyses using the Wilcoxon post-test at a significance level of p < 0.05. Sample Type Category and Hatchery Areas were analyzed separately
  2. 2 EI = Egg inventory, PrI = Pre-in ovo incubation, PoI = Post-in ovo incubation, PR = Chick processing, T = Chick transport, FAC = Facility