Table 3 Taxonomic classification of the 20 ASVs (Core20) present in the core microbiota of all sample type categories and hatchery areas
From: 16S amplicon-based microbiome biomapping of a commercial broiler hatchery
ASV | Phylum | Class | Order | Family | Genus1 | Species1 |
|---|---|---|---|---|---|---|
1 | Proteobacteria | Gammaproteobacteria | Burkholderiales | Methylophilaceae | Methylotenera | Â |
2 | Proteobacteria | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Salmonella | Â |
3 | Proteobacteria | Gammaproteobacteria | Pseudomonadales | Moraxellaceae | Acinetobacter | lwoffii |
4 | Proteobacteria | Gammaproteobacteria | Burkholderiales | Methylophilaceae | Methylotenera | Â |
5 | Proteobacteria | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Escherichia/Shigella | Â |
7 | Proteobacteria | Gammaproteobacteria | Pseudomonadales | Moraxellaceae | Acinetobacter | baumannii/bouvetii/haemolyticus/johnsonii/ junii/ lwoffii/oleivorans/oryzae/schindleri |
8 | Proteobacteria | Gammaproteobacteria | Pseudomonadales | Moraxellaceae | Enhydrobacter | Â |
10 | Proteobacteria | Gammaproteobacteria | Burkholderiales | Methylophilaceae | Â | Â |
14 | Proteobacteria | Gammaproteobacteria | Enterobacterales | Morganellaceae | Proteus | Â |
16 | Firmicutes | Bacilli | Lactobacillales | Enterococcaceae | Enterococcus | Â |
17 | Proteobacteria | Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Paracoccus | carotinifaciens/gahaiensis/haeundaensis/ hibiscisoli/ marcusii |
28 | Proteobacteria | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Klebsiella | Â |
32 | Proteobacteria | Alphaproteobacteria | Caulobacterales | Caulobacteraceae | Brevundimonas | albigilva/nasdae/vesicularis |
35 | Actinobacteriota | Actinobacteria | Micrococcales | Intrasporangiaceae | Janibacter | Â |
48 | Actinobacteriota | Actinobacteria | Micrococcales | Brevibacteriaceae | Brevibacterium | luteolum |
58 | Proteobacteria | Alphaproteobacteria | Caulobacterales | Caulobacteraceae | Brevundimonas | diminuta/naejangsanensis/vancanneytii |
68 | Proteobacteria | Alphaproteobacteria | Sphingomonadales | Sphingomonadaceae | Sphingomonas | desiccabilis/hankookensis/leidyi/panni |
83 | Proteobacteria | Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | Paracoccus | aestuarii/beibuensis/hibisci/marinus/ rhizosphaerae/ siganidrum/zhejiangensis |
113 | Bacteroidota | Bacteroidia | Flavobacteriales | Weeksellaceae | Chryseobacterium | Â |
120 | Bacteroidota | Bacteroidia | Flavobacteriales | Weeksellaceae | Chryseobacterium | taihuense |