Table 1 Search categories available in the NCBI taxonomy and search query in the NCBI BioSample database
Ruminant species | Search category | Taxonomy | Search query |
|---|---|---|---|
Cattle | Bovine gut metagenome | txid506599 | txid506599[Organism] AND biosample sra[filter] AND “public“[filter] |
Bovine metagenome | txid1218275 | txid1218275[Organism] AND biosample sra[filter] AND “public“[filter] | |
Sheep | Sheep gut metagenome | txid1904483 | txid1904483[Organism] AND biosample sra[filter] AND “public“[filter] |
Sheep metagenome | txid1898966 | txid1898966[Organism] AND biosample sra[filter] AND “public“[ filter] | |
Goats | Goat gut metagenome | txid2809082 | txid2809082[Organism] AND biosample sra[filter] AND “public“[filter] |
Generic | Gut metagenome | txid749906 | txid749906[Organism] AND biosample sra[filter] AND “public“[filter] |
Generic | Metagenome | txid256318 | txid256318[Organism] AND biosample sra[filter] AND “public“[filter] |