Fig. 2

Taxonomic overview and differences between sample types. A Stacked barplot of the relative abundances of MAGs in each sample, coloured by phylum. B Relative abundances of the 20 most common genera split by sample type. C Differential abundance of MAGs between sample types, in which MAGs with significant log-fold differences between sample types are coloured according to their phyla. D Differential abundance of phyla, with vertical dashed lines indicating significance thresholds