Temporal microbial colonization on different forages is driven by the rumen environmental conditions

Xie, X.; Wang, J. K.; Liu, J. X.; Guan, L. L.; Neves, A. L. A.

doi:10.1186/s42523-025-00407-x

Animal Microbiome

Table 3 Bacterial taxa affected by forage type and rumen environmental conditions

From: Temporal microbial colonization on different forages is driven by the rumen environmental conditions

Phylogeny²	AHR¹		CSR¹		W statistic	SEM
Phylogeny²	AH	CS	AH	CS	W statistic	SEM
Phylum
Firmicutes	53.23	56.29	53.91	48.51	12	0.98
Fibrobacteres	1.57	1.74	3.18	4.51	11	0.29
Class
Clostridia	49.27	52.43	45.63	42.81	21	0.92
Fibrobacteria	1.57	1.74	3.18	4.51	19	0.29
Alphaproteobacteria	0.14	0.20	0.74	0.61	18	0.08
Order
Clostridiales	49.27	52.42	45.61	42.81	37	0.92
Fibrobacterales	1.57	1.74	3.18	4.51	35	0.29
Coriobacteriales	1.23	1.53	0.97	0.76	33	0.07
Selenomonadales	2.79	2.85	2.23	1.84	33	0.11
Desulfovibrionales	0.32	0.40	0.21	0.14	32	0.02
Synergistales	0.13	0.15	0.09	0.05	31	0.01
Family
Lachnospiraceae	25.27	24.11	20.19	21.52	66	0.62
Ruminococcaceae	16.94	19.97	16.76	13.90	66	0.48
Fibrobacteraceae	1.57	1.74	3.18	4.51	65	0.29
Rikenellaceae	4.45	5.12	6.00	3.37	65	0.26
Prevotellaceae	25.48	21.20	21.33	30.17	65	1.06
Acidaminococcaceae	1.87	1.89	1.11	0.61	63	0.09
Coriobacteriaceae	1.23	1.53	0.97	0.76	62	0.07
Bacteroidales BS11 gut group	2.52	2.73	2.23	1.47	61	0.11
Bacteroidales S24-7 group	2.65	3.43	2.14	1.47	61	0.16
Family XIII	1.14	1.46	1.11	0.70	60	0.07
Defluviitaleaceae	0.28	0.28	0.17	0.13	60	0.02
Desulfovibrionaceae	0.32	0.40	0.21	0.14	59	0.02
Synergistaceae	0.13	0.15	0.09	0.05	58	0.01
Bacteroidales UCG-001	0.02	0.03	0.18	0.29	58	0.02
Genus
Roseburia	8.21	6.20	1.90	1.46	147	0.48
Prevotella 1	19.04	15.72	17.09	25.47	147	0.94
Rikenellaceae RC9 gut group	4.18	4.78	5.62	3.05	146	0.24
Fibrobacter	1.57	1.74	3.18	4.51	145	0.29
Butyrivibrio 2	2.28	1.71	4.17	5.04	145	0.25
Ruminococcaceae UCG-014	1.58	1.96	0.93	0.61	143	0.09
Pseudobutyrivibrio	2.29	1.79	2.81	3.43	143	0.17
Succiniclasticum	1.87	1.89	1.11	0.61	141	0.09
Lachnospiraceae XPB1014 group	0.75	1.19	1.44	1.71	141	0.07
Lachnospiraceae NK3A20 group	1.66	1.72	1.19	1.21	140	0.04
Oribacterium	1.35	0.78	0.75	0.73	140	0.09
Prevotellaceae UCG-001	1.40	1.46	1.33	1.84	140	0.08
Prevotellaceae UCG-004	1.01	1.27	0.56	0.39	139	0.06
Ruminococcaceae NK4A214 group	4.37	5.16	4.10	3.67	136	0.18
Atopobium	0.39	0.43	0.16	0.08	133	0.02
[Eubacterium] hallii group	0.36	0.35	0.26	0.15	133	0.02
Moryella	0.40	0.48	0.19	0.15	132	0.02
Ruminococcaceae UCG-013	0.18	0.10	0.07	0.05	131	0.01
[Eubacterium] coprostanoligenes group	0.75	0.94	0.66	0.51	131	0.04
Lachnospiraceae NK4A136 group	0.31	0.61	0.54	0.54	129	0.03
Family XIII AD3011 group	0.31	0.35	0.29	0.17	126	0.02
[Eubacterium] xylanophilum group	0.08	0.08	0.16	0.26	125	0.01
Desulfovibrio	0.32	0.40	0.21	0.14	124	0.02
Lachnoclostridium 1	0.13	0.15	0.04	0.02	124	0.01
Lachnospiraceae AC2044 group	1.39	1.64	0.94	1.04	124	0.11
Ruminococcaceae V9D2013 group	0.53	0.63	0.15	0.16	124	0.06
Papillibacter	0.13	0.18	0.37	0.34	124	0.03
Ruminobacter	0.54	0.77	0.50	0.44	123	0.04
Saccharofermentans	1.53	2.40	1.73	1.70	123	0.13
Succinimonas	0.27	0.30	0.16	0.10	122	0.02
Mogibacterium	0.20	0.25	0.14	0.10	122	0.01
Defluviitaleaceae UCG-011	0.28	0.28	0.17	0.13	122	0.02
Lachnospiraceae UCG-008	0.24	0.28	0.17	0.13	122	0.01
probable genus 10	0.15	0.28	0.26	0.27	119	0.02
[Ruminococcus] gauvreauii group	0.49	0.55	0.38	0.28	119	0.03
Prevotellaceae UCG-003	0.58	0.76	0.75	0.87	119	0.04

¹AHR: alfalfa hay rumen environmental condition; CSR: corn stover rumen environmental condition; AH: alfalfa hay; CS: corn stover
²Microbes significantly affected by forage types and rumen environmental conditions tested by ANCOM

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ISSN: 2524-4671

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